PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.L9WUK
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 361aa    MW: 41197.8 Da    PI: 7.4211
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.L9WUKgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.43.1e-35261182103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d+++++++sw e++++fvv+ + +fa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg+k+ll++i+
   Aradu.L9WUK  26 FLTKTYELVDDAATDHIVSWGEDETTFVVWRPPDFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDFFKKGEKHLLCEIH 113
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
   Aradu.L9WUK 114 RRKTS 118
                   **986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.0E-3717110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5822115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.53E-3323115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.6E-3126115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGIVLDSNCE SIVVSLETQK AVPAPFLTKT YELVDDAATD HIVSWGEDET TFVVWRPPDF  60
ARDLLPNYFK HNNFSSFVRQ LNTYGFRKIV PDRWEFANDF FKKGEKHLLC EIHRRKTSHT  120
HPHHQQLPSS INHNQNHFNN NIHLLPSATT FYHPFHQHNN RVSISPDSDE LPTWCDSDII  180
SNTTTTTTTT ASSSTLTALS QDNERLRRSN NILMSELAHM KKLYNDIIYF VQNHVKPVAP  240
SNTYSSSFIL PQHQPSSSSA TTTNCNAFSM LHKQVQQQQQ HHHDYLNSPT NTSRSSITMI  300
EDQSSKSCKT KLFGVSLQSN KKRVHPDYGF SHAFAETNNK ARLVLGNDND DYLGLNLMPP  360
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-202211817123Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015972580.10.0PREDICTED: heat stress transcription factor B-4-like
SwissprotQ9C6351e-114HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLG7J6F21e-151G7J6F2_MEDTR; Heat shock transcription factor
STRINGGLYMA14G09190.11e-137(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-108heat shock transcription factor B4